_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 4e-13
 Query name: gi|929112496|ref|XP_014067593.1| PREDICTED: selenoprotein H-like [Salmo salar]
 Query range: 23-127  (total 129)

 Target: /data/www-rg/seblastian_results/312070858/tempfiles/temptarget.fasta
 Chromosome: CM007948.1:subseq_55285314,104384_ Strand: -
 Positions:
 -Exon 1  50711        50784
 -Exon 2  50288        50430
 -Exon 3  50000        50097

 Redox box: YES

Query   EKRGKGEDDQPEIVTEGRRVVIEHC <---Intron---> KSURVYGRNAEGVRVALLAACPDLTVVLNPQKPRSKSFEVILVEGEKE <---Intron
         |||| |/ / |  |||/||||||| <   280bp    > ||| || | ||||| ||||| ||| ||||||||| || || |||| || <   190bp 
Target  RKRGKREEGETETATEGQRVVIEHC                KSUYVYRRCAEGVRDALLAARPDLIVVLNPQKPRKKSLEVTLVEGGKE           
        cacgaaggggagagaggcaggagct                aattgtactggggcggccggccgcaggcaccaccaaacggacggggag           
        gaggagaagacacccagagtttaag                aggatagggcagtgacttccgcatttttacaacgaagtatcttagga            
        aggtaagggaggttaacgggctac                tgcacgcagttgggatccgtccacccgtgccgaccgacggcatggaga            
                                                   *                                                        

Query   ---> VCLWSGIKKGPPRKLKFPEPEVVVSALEKALK
           > ||||/||| ||| /|||||| /||/|||/|||
Target       VCLWTGIKLGPPARLKFPEPAIVVAALEEALK
             gtctagaacgccgacatcgcgaggggcgggca
            atgtgcgtatgcccgtatcacctttcctaacta
            ggccgacagacatcgggctgtctgtacgggaga
                                             
 Sequence until next stop: 
AATTAA
 N  * 

 Distance CDS-SECIS: 250 ; UGA-SECIS: 481

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = CM007948.1:subseq_55285314,104384_ Strand = - Positions = 49749 - 49673
 Found by:  Infernal (score=22.44) Covels (score=33.39)
 Stem2 length = 9   Apical loop length = 18   Insertion in stem2 = 0, 0
 Free Energy = -19.47

         ..(((((((.......(((((((((((((((................))))))))))))))).........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcC-cuuuuuggggcgggccaggcCuGAUGuuu-uuucaugaccggc
         ..(([(((((--....{[[{(((((({(((..................)))}))))))}]]}.....-..)))))]))..
 target  AACUGGACGC--AGAAUGAUGGGGACUGACCAACGGGGUUGCUCCCCAGUCUGUCCUCUGAUGACCC-AAGCGUCAAGCU
                         ****           ^^                         ****